BtaEX0025000 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030247 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr11:105679878-105680515:+
Coord C1 exon
chr11:105679878-105680002
Coord A exon
chr11:105680093-105680176
Coord C2 exon
chr11:105680482-105680515
Length
84 bp
Sequences
Splice sites
3' ss Seq
AGTGCCTCCCCTGTCCACAGCTC
3' ss Score
9.78
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTAGTGACCTGCAGAGCTCCCATTGCACCCTGGGCGAGGCTTTCGAGGACCTGGACTGGGAGACTGAGAAGGGCCTGGAGGCTGTAGCCTGTGACACTGAGGGCTTCGTGCCACCCAAGGTCATG
Seq A exon
CTCATTTCCTCCAAAGTGCCCAAAGCCGAGTACATCCCCACAATCATCCGCAGGGACGACCCCGCCATCATCCCCATCCTCTAC
Seq C2 exon
GACCATGAGCATGCAACCTTCGAGGACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030247-'17-14,'17-12,18-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF142521=DUF4347=PU(1.4=4.8)
A:
PF142521=DUF4347=FE(19.4=100)
C2:
PF142521=DUF4347=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGTGACCTGCAGAGCTCCC
R:
CCAGGATGTCCTCGAAGGTTG
Band lengths:
159-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development