GgaEX7009684 @ galGal4
Exon Skipping
Gene
ENSGALG00000008681 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr17:1748808-1750893:+
Coord C1 exon
chr17:1748808-1748929
Coord A exon
chr17:1749727-1749810
Coord C2 exon
chr17:1750860-1750893
Length
84 bp
Sequences
Splice sites
3' ss Seq
ACTTCTTTTTTTCTTCACAGCTC
3' ss Score
11.24
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GCCATGACCTTCAGGATTCCTGTGGCACTTTGGATGGTGACTTTGACTTGAACTGGGAAGCAGAAAAGGAGCTTGAAGCCATGGCGTGTGACGGAGAAGACTTTATTCCACCAAAAATAATG
Seq A exon
CTCATTTCTTCAAAGGTGCCCAAAGCTGAGTATGTCCCAACAATTATCCGCAGGGACGATCCCTCCATCATCCCCATTCTCTAT
Seq C2 exon
GACCATGAACACGCCACCTTTGATGACATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681-'17-26,'17-24,18-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGACCTTCAGGATTCCT
R:
GGATGTCATCAAAGGTGGCGT
Band lengths:
153-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]