HsaEX6064304 @ hg19
Exon Skipping
Gene
ENSG00000165802 | NELF
Description
nasal embryonic LHRH factor [Source:HGNC Symbol;Acc:29843]
Coordinates
chr9:140347005-140347632:-
Coord C1 exon
chr9:140347508-140347632
Coord A exon
chr9:140347188-140347271
Coord C2 exon
chr9:140347005-140347038
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCAGCTCTTTGTCTCCGCAGCTC
3' ss Score
8.32
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCAGTGACCTGCAGAGCTCCCACTGCACGCTGGACGAGGCCTTCGAGGACCTGGACTGGGACACTGAGAAGGGCCTGGAGGCTGTGGCCTGCGACACCGAAGGCTTCGTGCCACCAAAGGTCATG
Seq A exon
CTCATTTCCTCCAAGGTGCCCAAGGCTGAGTACATCCCCACTATCATCCGCCGGGATGACCCCTCCATCATCCCCATCCTCTAC
Seq C2 exon
GACCATGAGCACGCAACCTTCGAGGACATCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802-'12-19,'12-18,13-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF139501=Epimerase_Csub=PD(70.2=78.6)
A:
PF142521=DUF4347=FE(19.1=100)
C2:
PF142521=DUF4347=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTGCAGAGCTCCC
R:
GATGTCCTCGAAGGTTGCGTG
Band lengths:
153-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)