HsaEX6064304 @ hg38
Exon Skipping
Gene
ENSG00000165802 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr9:137452553-137453180:-
Coord C1 exon
chr9:137453056-137453180
Coord A exon
chr9:137452736-137452804
Coord C2 exon
chr9:137452553-137452586
Length
69 bp
Sequences
Splice sites
3' ss Seq
CGCAGCTCATTTCCTCCAAGGTG
3' ss Score
4.68
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCAGTGACCTGCAGAGCTCCCACTGCACGCTGGACGAGGCCTTCGAGGACCTGGACTGGGACACTGAGAAGGGCCTGGAGGCTGTGGCCTGCGACACCGAAGGCTTCGTGCCACCAAAGGTCATG
Seq A exon
GTGCCCAAGGCTGAGTACATCCCCACTATCATCCGCCGGGATGACCCCTCCATCATCCCCATCCTCTAC
Seq C2 exon
GACCATGAGCACGCAACCTTCGAGGACATCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802-'22-28,'22-27,23-28
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTGCAGAGCTCCC
R:
GATGTCCTCGAAGGTTGCGTG
Band lengths:
153-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains