RnoEX0061199 @ rn6
Exon Skipping
Gene
ENSRNOG00000008810 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:RGD Symbol;Acc:619819]
Coordinates
chr3:2267916-2268538:+
Coord C1 exon
chr3:2267916-2268040
Coord A exon
chr3:2268291-2268374
Coord C2 exon
chr3:2268505-2268538
Length
84 bp
Sequences
Splice sites
3' ss Seq
GGCTTTCCCTGTCCCCACAGCTA
3' ss Score
10.66
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GCAGTGACCTACAGAGCTCACACTGCACCCTGGATGAGGCTTGTGAGGACCTGGACTGGGACACAGAGAAAGGCCTGGAGGCCACGGCCTGCGACACTGAGGGCTTCTTGCCACCCAAGGTCATG
Seq A exon
CTAATCTCCTCCAAGGTGCCCAAGGCCGAGTACATCCCAACCATCATCCGCAGAGACGACCCATCCATCATCCCCATCCTCTAT
Seq C2 exon
GACCATGAGCACGCAACGTTCGAGGACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008810-'18-21,'18-19,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGACCTACAGAGCTCAC
R:
CCAGGATGTCCTCGAACGTTG
Band lengths:
159-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]