GgaEX1041343 @ galGal4
Exon Skipping
Gene
ENSGALG00000012448 | ORC4
Description
origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
Coordinates
chr7:34069882-34072554:-
Coord C1 exon
chr7:34072483-34072554
Coord A exon
chr7:34070788-34070864
Coord C2 exon
chr7:34069882-34069972
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTGTTCTATCTGTAGGTG
3' ss Score
11.41
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ATAGAATCTTCTGCAATGAATAAACGGAAGTTAAAGGAAAGCAGTGGTACAGATGGGGAATGCATCTCGCAG
Seq A exon
GTGCAGAAAATGTTACGTGAAAGACTGTGTCACCATCGTGCTATGGGGAAATTGTTTGGGGTTGATCAGCAGTACAA
Seq C2 exon
GCATCTGCTGGAACTGCTGAAGCAAACTACAGTTTGTGGAGAAAGTAATTCTGCCCTCATTATTGGACCCCGTGGATCAGGAAAGACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012448-'3-10,'3-7,6-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF131911=AAA_16=PU(5.8=34.6)
C2:
PF131911=AAA_16=FE(19.4=100)
Main Skipping Isoform:
ENSGALT00000020350fB10181
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCTTCTGCAATGAATAAACGGA
R:
GCAGTCTTTCCTGATCCACGG
Band lengths:
160-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]