HsaEX6015827 @ hg19
Exon Skipping
Gene
ENSG00000115947 | ORC4L
Description
origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:8490]
Coordinates
chr2:148730308-148733544:-
Coord C1 exon
chr2:148733471-148733544
Coord A exon
chr2:148731017-148731093
Coord C2 exon
chr2:148730308-148730398
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATTCACTTTATTTTCATCAGGTA
3' ss Score
7.44
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GATTTGAATTTGTTGAAATGAGCAGTCGTAAATCAAAGAGTAACAGCTTAATTCACACAGAGTGCCTTTCACAG
Seq A exon
GTACAAAGAATTTTACGTGAAAGATTTTGTCGTCAGAGTCCACATAGTAACCTATTTGGAGTGCAAGTACAATACAA
Seq C2 exon
ACACTTAAGTGAGCTGCTGAAAAGAACTGCTCTCCATGGAGAGAGTAACTCTGTCCTTATTATCGGACCCCGAGGATCAGGAAAAACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947-'5-11,'5-10,6-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF131911=AAA_16=PU(10.0=34.6)
C2:
PF131911=AAA_16=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAATTTGTTGAAATGAGCAGTCGT
R:
AGTTTTTCCTGATCCTCGGGG
Band lengths:
159-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)