HsaEX6015827 @ hg38
Exon Skipping
Gene
ENSG00000115947 | ORC4
Description
origin recognition complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
Coordinates
chr2:147972739-147975975:-
Coord C1 exon
chr2:147975902-147975975
Coord A exon
chr2:147973448-147973524
Coord C2 exon
chr2:147972739-147972829
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATTCACTTTATTTTCATCAGGTA
3' ss Score
7.44
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GATTTGAATTTGTTGAAATGAGCAGTCGTAAATCAAAGAGTAACAGCTTAATTCACACAGAGTGCCTTTCACAG
Seq A exon
GTACAAAGAATTTTACGTGAAAGATTTTGTCGTCAGAGTCCACATAGTAACCTATTTGGAGTGCAAGTACAATACAA
Seq C2 exon
ACACTTAAGTGAGCTGCTGAAAAGAACTGCTCTCCATGGAGAGAGTAACTCTGTCCTTATTATCGGACCCCGAGGATCAGGAAAAACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947-'13-19,'13-17,14-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF131911=AAA_16=PU(10.0=34.6)
C2:
PF131911=AAA_16=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAATTTGTTGAAATGAGCAGTCGT
R:
AGTTTTTCCTGATCCTCGGGG
Band lengths:
159-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains