MmuEX0033159 @ mm10
Exon Skipping
Gene
ENSMUSG00000026761 | Orc4
Description
origin recognition complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1347043]
Coordinates
chr2:48936772-48940400:-
Coord C1 exon
chr2:48940333-48940400
Coord A exon
chr2:48937452-48937528
Coord C2 exon
chr2:48936772-48936862
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTTCATCTTATGTTTATCAGGTA
3' ss Score
6.87
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GATTTGAATTAATCGAGATGAGCAGTCGTAAAACCAAGAGTAATGCACATGCAGAGTGTCTTTCACAG
Seq A exon
GTACAAAGAATTTTACGTGAAAGATTTTGTCATCATAGTCCACATAGCAACCTCTTTGGAGTGCAAGTACAATACAA
Seq C2 exon
GCATTTGATTGAGCTACTCAAAAGAACTGCTATCTATGGAGAAAGCAATTCTGTACTCATTGTTGGACCACGAGGATCAGGAAAGACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026761_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=0.000 C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
PF131911=AAA_16=PU(23.1=34.6)
C2:
PF131911=AAA_16=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTGAATTAATCGAGATGAGCAGT
R:
TGTGGTCTTTCCTGATCCTCGT
Band lengths:
159-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types