RnoEX6016715 @ rn6
Exon Skipping
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33061810-33065432:-
Coord C1 exon
chr3:33065366-33065432
Coord A exon
chr3:33062477-33062553
Coord C2 exon
chr3:33061810-33061900
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATCTTATGTTTGTTTATTAGGTA
3' ss Score
9.1
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATTTGAGTTAGTCAAGATGAGCAATCGTAAAAGCAAGAATAACATACATGCAGAGTGTCTTTCCCAG
Seq A exon
GTACAAAGAATTTTACGTGAAAGGTTTTGTCATCATACTCCTCATAGCAACCTATTTGGAGTGCAAGTACAATACAA
Seq C2 exon
GCATTTAATTGAGCTACTCAAAAGAACTGCTATCTATGGAGAAAGTAATTCTTTACTCATTGTTGGACCACGAGGATCAGGAAAGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF131911=AAA_16=PU(5.8=34.6)
C2:
PF131911=AAA_16=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTAGTCAAGATGAGCAATCGT
R:
CGTGGTCTTTCCTGATCCTCG
Band lengths:
155-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]