GgaEX1041538 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr5:13094304-13095246:+
Coord C1 exon
chr5:13094304-13094391
Coord A exon
chr5:13094600-13094754
Coord C2 exon
chr5:13095128-13095246
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGTGACTCTCCTTTTGTTAGTGT
3' ss Score
4.6
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TTTATGTGTTTTAATGGAGGTGAATGTGTCTACAAGGAACTCTGCAACTGTAGTCGATTTAATGCATCTGGACCAAGATGTCAGACAG
Seq A exon
TGTACAACACAGGTGCTGAAAGAGATCATATATGCCGAACATGGGGTCAATATCACTTTGAAACTTTTGATGGACTCTATTTCTATTTTTCTGGGAAATCCACATATGCACTTGTGAGACACACTGAATTAGATGAGCAGAGTTTTTCTATACAG
Seq C2 exon
GTGAATAATGATCCTGAATGCCATTCTTCTCCATACTCTTGCAAACGGTCTGTTAGTTTATTCTTTTCCGGAGATGAGCAAATAAAAATGAGCAGTGAAGTCACCTATAAAGGATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208-'0-1,'0-0,1-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(26.5=76.9)
C2:
PF0009420=VWD=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTTTAATGGAGGTGAATGTGT
R:
CCAAATCCTTTATAGGTGACTTCACT
Band lengths:
203-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]