GgaEX1041538 @ galGal4
Exon Skipping
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11386049-11387485:+
Coord C1 exon
chr5:11386049-11386141
Coord A exon
chr5:11386350-11386504
Coord C2 exon
chr5:11387280-11387485
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGTGACTCTCCTTTTGTTAGTGT
3' ss Score
4.6
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTTCATTTATGTGTTTTAATGGAGGTGAATGTGTCTACAAGGAACTCTGCAACTGTAGTCGATTTAATGCATCTGGACCAAGATGTCAGACAG
Seq A exon
TGTACAACACAGGTGCTGAAAGAGATCATATATGCCGAACATGGGGTCAATATCACTTTGAAACTTTTGATGGACTCTATTTCTATTTTTCTGGGAAATCCACATATGCACTTGTGAGACACACTGAATTAGATGAGCAGAGTTTTTCTATACAG
Seq C2 exon
ACTTCAGTTGCCTTCTGTTATTGGAAACTTACACATCCAGAAACTAGCTGGATACTTTCTAGTCAGGCACCAGTATGCCTTTACTCTGGCTTGGGATGGTGTATCTGCAGTGTATATCAAAATGGCACCGCAGTACCTGGGCAAAACGCATGGACTGTGTGGGAACAATAATGCTGTCCTGCAGGATGATCTTGAAACTAGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(26.3=76.9)
C2:
PF0009420=VWD=FE(45.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGAATGTGTCTACAAGG
R:
TTGTTCCCACACAGTCCATGC
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]