HsaEX6001101 @ hg19
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:8516]
Coordinates
chr11:17574666-17577444:+
Coord C1 exon
chr11:17574666-17574758
Coord A exon
chr11:17574912-17575066
Coord C2 exon
chr11:17577326-17577444
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTCTCTCCCTCAGTGT
3' ss Score
11.86
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACTTGTTCTCCTGCTTCAATGGAGGCGAGTGTGTGCACCCAGCCTTCTGTGACTGCAGACGCTTCAATGCCACTGGACCGCGCTGCCAGATGG
Seq A exon
TGTACAATGCCGGCCCTGAGAGGGACAGCATTTGCCGGGCGTGGGGGCAGCACCACGTGGAGACATTTGATGGGCTCTACTACTACCTCTCCGGAAAGGGCAGCTACACCCTGGTGGGTCGCCATGAGCCCGAGGGACAGAGCTTCTCCATCCAG
Seq C2 exon
GTACACAATGACCCGCAGTGTGGCTCTTCACCCTACACCTGCTCCAGGGCTGTCAGCCTCTTCTTTGTGGGTGAGCAGGAGATCCATCTGGCCAAGGAGGTCACCCATGGAGGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'4-10,'4-8,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(26.5=76.9)
C2:
PF0009420=VWD=FE(25.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTCTCCTGCTTCAATGGAGG
R:
CTCATGCCTCCATGGGTGAC
Band lengths:
210-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)