MmuEX6010908 @ mm10
Exon Skipping
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:46246253-46249115:+
Coord C1 exon
chr7:46246253-46246345
Coord A exon
chr7:46246495-46246649
Coord C2 exon
chr7:46248997-46249115
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTCACTTTGTCCTGTCTCAGTGT
3' ss Score
8.11
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACTTGTTCTCCTGCTTCAATGGGGGTGAGTGTGTGCACCCAGCTCTCTGTGACTGCAGGCGCTTCAATGCCACTGGACCCCGTTGCCAGTTGG
Seq A exon
TGTATAATGTAGGTCCTGAGCGGGACAGCATCTGCCGGACCTGGGGGCAGCACCACGTGGAGACGTTTGACGGCCTGTACTACTACTTTTCTGGAAAGGGCAGCTACACGCTGGTGGGACACCACGAACCCGAGGGTCAGAGTTTTTCCATCCAG
Seq C2 exon
GTGCACAATGACCCACAGTGTGGCTCTGCCCACTACACCTGCCCGAGGTCTGTCAGCCTCTTCCTCTCAGGTGAACGTGAGATCTGCCTGGCCAAGGAAGTCACCCATGGAGGTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-'1-15,'1-4,5-15=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(26.5=76.9)
C2:
PF0009420=VWD=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCCTGCTTCAATGGGGG
R:
ACCTCCATGGGTGACTTCCTT
Band lengths:
203-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types