HsaEX6001101 @ hg38
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr11:17553119-17555897:+
Coord C1 exon
chr11:17553119-17553211
Coord A exon
chr11:17553365-17553519
Coord C2 exon
chr11:17555779-17555897
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTCTCTCCCTCAGTGT
3' ss Score
11.86
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACTTGTTCTCCTGCTTCAATGGAGGCGAGTGTGTGCACCCAGCCTTCTGTGACTGCAGACGCTTCAATGCCACTGGACCGCGCTGCCAGATGG
Seq A exon
TGTACAATGCCGGCCCTGAGAGGGACAGCATTTGCCGGGCGTGGGGGCAGCACCACGTGGAGACATTTGATGGGCTCTACTACTACCTCTCCGGAAAGGGCAGCTACACCCTGGTGGGTCGCCATGAGCCCGAGGGACAGAGCTTCTCCATCCAG
Seq C2 exon
GTACACAATGACCCGCAGTGTGGCTCTTCACCCTACACCTGCTCCAGGGCTGTCAGCCTCTTCTTTGTGGGTGAGCAGGAGATCCATCTGGCCAAGGAGGTCACCCATGGAGGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'5-10,'5-8,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(26.5=76.9)
C2:
PF0009420=VWD=FE(25.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTCTCCTGCTTCAATGGAGG
R:
CTCATGCCTCCATGGGTGAC
Band lengths:
210-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains