GgaEX1047862 @ galGal4
Exon Skipping
Gene
ENSGALG00000006271 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chrLGE22C19W28_E50C23:336641-337849:+
Coord C1 exon
chrLGE22C19W28_E50C23:336641-336729
Coord A exon
chrLGE22C19W28_E50C23:337151-337353
Coord C2 exon
chrLGE22C19W28_E50C23:337713-337849
Length
203 bp
Sequences
Splice sites
3' ss Seq
CGTATGTGCCTTTTCTCCAGAAT
3' ss Score
7.92
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAGGATGGATACCACAGTGCGGAATCTGTGGAATTTGTGTGACCAACTCATACGCCAGGCTGAAGTTTTAAGTGAAGGAAACGAGTACC
Seq A exon
AATTTATTCAGTTGGCAAAGAACTTTGAAGACTATCGAAGAAAGTGGCAGAAAACTGAGCAGGAGCTTGGTAGGTACAAAGACCTTCTGATGAAAAGTGAAGCTGAGCGTAGTGCTTTGGATGTGAAGCTGAAACACGCTCGCAATCAAGTGGATGTAGAGATCAAACGCAGGCAAAAAGCTGAAGCAGACTGTGAGAAGTTG
Seq C2 exon
GAGAGGCAAATACAGCTGATTCGAGAGCTGCTCATGTGTGATGCATCTGGGAGCATTCAGCTAAGTGAAGAACAGAAGTCTGCCCTTGCCTTCCTTAACAGACCACAGGTTTCTGTAGGAGGTTCAGGCAATAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271-'13-4,'13-3,16-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(21.7=100)
A:
PF0149614=V_ATPase_I=FE(48.6=100)
C2:
PF0149614=V_ATPase_I=PD(22.5=67.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGGATACCACAGTGCG
R:
TTGCCTGAACCTCCTACAGAA
Band lengths:
220-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]