RnoEX0073494 @ rn6
Exon Skipping
Gene
ENSRNOG00000049033 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:RGD Symbol;Acc:1305912]
Coordinates
chr7:141294134-141298078:-
Coord C1 exon
chr7:141297990-141298078
Coord A exon
chr7:141295373-141295578
Coord C2 exon
chr7:141294134-141294270
Length
206 bp
Sequences
Splice sites
3' ss Seq
AAGTTTTTGCCTGTCCTCAGTTG
3' ss Score
7.13
5' ss Seq
CTGGTGTGC
5' ss Score
3.46
Exon sequences
Seq C1 exon
AAAGATGGATACTACAATGGTGAATCTGTGGACTCTGTTTGAGCAGCTTGTGCGCCGGCTGGAGATTATCAATGAAGGAAATGAAAGCA
Seq A exon
TTGAATTCATCCAGGTTGTAAAGGACTTCGAGGACTTCCGAAAGAAATGTCAAAGAACCAACCAGGAGCTGGAGAAATTCAAAGATCTGTTGTTGAAGGCAGAGACTGGGCGGAGTGCCCTGGACGTCAAGCTGAAGCACGCCCGTAACCAAGTGGATGTGGAGATCAAACGGAGGCAACGAGCTGAGGCCGAGTGTGCGAAGCTG
Seq C2 exon
GAACAACAGATTCAGCTGATTCGAGATATACTCATGTGTGACACAACTGGCAGCATCCAGCTAAGCGAGGAACAAAAATCAGCTCTGGCTTTTCTCAACCGAGGCCAAGCATCCAGTGGCAACGCTGGGAACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049033-'9-5,'9-4,11-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.181
Domain overlap (PFAM):
C1:
PF059116=DUF869=PU(12.2=58.6)
A:
PF059116=DUF869=FE(48.9=100)
C2:
PF059116=DUF869=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACTACAATGGTGAATCTGTGG
R:
CTATTGTTCCCAGCGTTGCCA
Band lengths:
221-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]