DreEX6081777 @ danRer10
Exon Skipping
Gene
ENSDARG00000015460 | racgap1
Description
Rac GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1917]
Coordinates
chr23:33846620-33847253:-
Coord C1 exon
chr23:33847163-33847253
Coord A exon
chr23:33846840-33847042
Coord C2 exon
chr23:33846620-33846762
Length
203 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCTTTTCGTTGTCAGAGT
3' ss Score
8.38
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
GAGGACATGGAGACCGCTGTGATGAATCTTCACAGCATTTTCGAAAGCCTGCGGGCACAAGCTGATGTTCTCAATGAAAGCATTGAGCCCC
Seq A exon
AGTTCATTCAGCTGGCCATAAACTTTGAGGACAACCGTCGTAGATGGCTGAGACTCGAACAGGAGCTGAATGCATGCAAAGAAGTGCTCACTAAAGCTGAGACGGAGCGTGGAGCTCTGGAGGTCAAGCTCAAACATGCTCGTAACCAAGTAGATGTGGAGATCCGTAGAAGACAGAAAGCCGAGTCTGACTGCGCAAAGCTG
Seq C2 exon
GACCGTCAGATCCAGCTCATCCGGGAGCTGCTGGTTTCTGAAGGCTCTAGTAGCAGCATCCAGTTAAATGAGGAGCAGCGCTCTGCTCTGGCCTTCCTAAATGCCCGTTCTCAGAATCCTGCAAATTTGAACACTAGCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015460-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGAGACCGCTGTGATG
R:
CGTCTGCTAGTGTTCAAATTTGCA
Band lengths:
231-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]