MmuEX6056439 @ mm9
Exon Skipping
Gene
ENSMUSG00000023015 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:MGI Symbol;Acc:MGI:1349423]
Coordinates
chr15:99468069-99473402:-
Coord C1 exon
chr15:99473314-99473402
Coord A exon
chr15:99470045-99470250
Coord C2 exon
chr15:99468069-99468205
Length
206 bp
Sequences
Splice sites
3' ss Seq
AAGTTTTTACCTGTCCTCAGTTG
3' ss Score
6.35
5' ss Seq
CTGGTGTGC
5' ss Score
3.46
Exon sequences
Seq C1 exon
AAAGATGGATACTACAATGGTGAATTTGTGGACTCTGTTTGAGCAGCTTGTGCGCCGGATGGAGATTATCAATGAAGGAAATGAAAGCA
Seq A exon
TTGAATTCATCCAGGTTGTGAAGGACTTCGAGGACTTCCGAAAGAAGTATCAAAGAACCAACCAGGAGCTGGAGAAATTCAAAGACCTATTGTTGAAAGCAGAGACTGGGCGGAGCGCCCTGGACGTGAAGCTGAAGCATGCCCGTAATCAAGTGGACGTGGAGATCAAGCGGAGGCAGCGCGCTGAGGCAGAGTGTGCAAAGCTG
Seq C2 exon
GAACAACAGATTCAGCTGATTCGAGACATACTCATGTGTGACACATCTGGCAGTATTCAGCTGAGCGAGGAACAAAAATCAGCTCTCGCTTTCCTCAACCGAGGCCAAGCATCCAGTGGCCACGCCGGCAACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023015-'9-9,'9-4,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.073 C2=0.203
Domain overlap (PFAM):
C1:
PF059116=DUF869=PU(12.6=58.6),PF054786=Prominin=PU(12.5=62.1)
A:
PF059116=DUF869=FE(50.4=100),PF054786=Prominin=FE(47.2=100)
C2:
PF059116=DUF869=FE(33.3=100),PF054786=Prominin=FE(31.2=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACTACAATGGTGAATTTGTGG
R:
CTATTGTTGCCGGCGTGG
Band lengths:
221-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: