MmuEX6056439 @ mm10
Exon Skipping
Gene
ENSMUSG00000023015 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:MGI Symbol;Acc:MGI:1349423]
Coordinates
chr15:99637638-99642971:-
Coord C1 exon
chr15:99642883-99642971
Coord A exon
chr15:99639614-99639819
Coord C2 exon
chr15:99637638-99637774
Length
206 bp
Sequences
Splice sites
3' ss Seq
AAGTTTTTACCTGTCCTCAGTTG
3' ss Score
6.35
5' ss Seq
CTGGTGTGC
5' ss Score
3.46
Exon sequences
Seq C1 exon
AAAGATGGATACTACAATGGTGAATTTGTGGACTCTGTTTGAGCAGCTTGTGCGCCGGATGGAGATTATCAATGAAGGAAATGAAAGCA
Seq A exon
TTGAATTCATCCAGGTTGTGAAGGACTTCGAGGACTTCCGAAAGAAGTATCAAAGAACCAACCAGGAGCTGGAGAAATTCAAAGACCTATTGTTGAAAGCAGAGACTGGGCGGAGCGCCCTGGACGTGAAGCTGAAGCATGCCCGTAATCAAGTGGACGTGGAGATCAAGCGGAGGCAGCGCGCTGAGGCAGAGTGTGCAAAGCTG
Seq C2 exon
GAACAACAGATTCAGCTGATTCGAGACATACTCATGTGTGACACATCTGGCAGTATTCAGCTGAGCGAGGAACAAAAATCAGCTCTCGCTTTCCTCAACCGAGGCCAAGCATCCAGTGGCCACGCCGGCAACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023015_MULTIEX1-1/7=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.073 C2=0.203
Domain overlap (PFAM):
C1:
PF059116=DUF869=PU(15.3=62.1)
A:
NO
C2:
PF059116=DUF869=FE(36.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACTACAATGGTGAATTTGTGG
R:
CTATTGTTGCCGGCGTGG
Band lengths:
221-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types