GgaEX6046992 @ galGal3
Exon Skipping
Gene
ENSGALG00000006271 | RACGAP1
Description
NA
Coordinates
chrE22C19W28_E50C23:316610-317814:+
Coord C1 exon
chrE22C19W28_E50C23:316610-316694
Coord A exon
chrE22C19W28_E50C23:317116-317318
Coord C2 exon
chrE22C19W28_E50C23:317678-317814
Length
203 bp
Sequences
Splice sites
3' ss Seq
CGTATGTGCCTTTTCTCCAGAAT
3' ss Score
7.92
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATGGATACCACAGTGCGGAATCTGTGGAATTTGTGTGACCAACTCATACGCCAGGCTGAAGTTTTAAGTGAAGGAAACGAGTACC
Seq A exon
AATTTATTCAGTTGGCAAAGAACTTTGAAGACTATCGAAGAAAGTGGCAGAAAACTGAGCAGGAGCTTGGTAGGTACAAAGACCTTCTGATGAAAAGTGAAGCTGAGCGTAGTGCTTTGGATGTGAAGCTGAAACACGCTCGCAATCAAGTGGATGTAGAGATCAAACGCAGGCAAAAAGCTGAAGCAGACTGTGAGAAGTTG
Seq C2 exon
GAGAGGCAAATACAGCTGATTCGAGAGCTGCTCATGTGTGATGCATCTGGGAGCATTCAGCTAAGTGAAGAACAGAAGTCTGCCCTTGCCTTCCTTAACAGACCACAGGTTTCTGTAGGAGGTTCAGGCAATAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271-'0-3,'0-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACCACAGTGCGGAATC
R:
CTCTTATTGCCTGAACCTCCT
Band lengths:
221-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]