GgaEX1051160 @ galGal3
Exon Skipping
Gene
ENSGALG00000011009 | F1NN72_CHICK
Description
NA
Coordinates
chr7:21301641-21309374:-
Coord C1 exon
chr7:21309252-21309374
Coord A exon
chr7:21302961-21303242
Coord C2 exon
chr7:21301641-21301694
Length
282 bp
Sequences
Splice sites
3' ss Seq
TGGTTTCATTTGTACACCAGGTG
3' ss Score
6.36
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTCTCTTTGGTTAGCTTAACAGCTAATGCCTTGGGCTACTCAGAACTTGGTGCGATTAAATCCCTTAGGACACTAAGAGCTTTGAGACCTCTAAGAGCCTTGTCGCGATTTGAAGGGATGAGG
Seq A exon
GTGGTTGTAAATGCCCTCTTAGGAGCAATTCCATCCATTATGAATGTGCTTCTTGTTTGCCTTATATTCTGGTTGATCTTCAGTATCATGGGAGTAAATCTATTTGCTGGAAAATTTTACTACTGTGTTAACACTACAACTGATGAGAGATTTGATATCAGCCAAATCAACAATTATAGCCAATGCGAAGAGCTCATTAAAAACAATGAAACTGCCAGATGGAAGAATGTGAAAGTTAACTTTGATAATGTAGGCCTTGGTTACCTTTCTCTACTTCAAGTG
Seq C2 exon
GCTACATTTAAAGGATGGATGGATATCATGTATGCAGCTGTGGATTCTCGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'30-27,'30-26,31-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
PF0052026=Ion_trans=FE(40.6=100)
C2:
PF0052026=Ion_trans=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAACAGCTAATGCCTTGGG
R:
ATTACGAGAATCCACAGCTGCA
Band lengths:
164-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]