RnoEX0078550 @ rn6
Exon Skipping
Gene
ENSRNOG00000005018 | Scn2a
Description
sodium voltage-gated channel alpha subunit 2 [Source:RGD Symbol;Acc:3632]
Coordinates
chr3:51805518-51809951:+
Coord C1 exon
chr3:51805518-51805640
Coord A exon
chr3:51808786-51809067
Coord C2 exon
chr3:51809898-51809951
Length
282 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTCCTCCCATGCCAGGTT
3' ss Score
9.72
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
GTCTCCTTGGTTAGCTTAACTGCAAATGCCTTGGGCTATTCGGAACTTGGTGCCATCAAGTCCCTCCGAACGTTAAGAGCTCTGAGACCTCTACGAGCCTTATCCCGATTTGAAGGAATGAGG
Seq A exon
GTTGTTGTAAACGCTCTCTTAGGCGCCATCCCCTCCATAATGAACGTACTTCTGGTCTGCCTGATCTTTTGGCTAATATTCAGTATCATGGGGGTGAATCTCTTTGCTGGCAAGTTCTACCATTGCATCAACTACACCACGGGGGAAATGTTTGATGTGAGCGTGGTCAACAACTACAGTGAATGCCAAGCTCTCATTGAGAGCAATCAGACGGCCAGGTGGAAGAACGTGAAGGTCAACTTCGATAACGTGGGACTCGGATACCTTTCTCTGCTCCAAGTA
Seq C2 exon
GCCACCTTTAAAGGATGGATGGATATCATGTATGCAGCTGTTGACTCAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005018-'30-35,'30-34,31-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
PF0052026=Ion_trans=FE(40.6=100)
C2:
PF0052026=Ion_trans=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTTGGTTAGCTTAACTGCA
R:
TTTCTTGAGTCAACAGCTGCA
Band lengths:
176-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]