GgaEX1051160 @ galGal4
Exon Skipping
Gene
ENSGALG00000011009 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr7:19323536-19331269:-
Coord C1 exon
chr7:19331147-19331269
Coord A exon
chr7:19324856-19325137
Coord C2 exon
chr7:19323536-19323589
Length
282 bp
Sequences
Splice sites
3' ss Seq
TGGTTTCATTTGTACACCAGGTG
3' ss Score
6.36
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTCTCTTTGGTTAGCTTAACAGCTAATGCCTTGGGCTACTCAGAACTTGGTGCGATTAAATCCCTTAGGACACTAAGAGCTTTGAGACCTCTAAGAGCCTTGTCGCGATTTGAAGGGATGAGG
Seq A exon
GTGGTTGTAAATGCCCTCTTAGGAGCAATTCCATCCATTATGAATGTGCTTCTTGTTTGCCTTATATTCTGGTTGATCTTCAGTATCATGGGAGTAAATCTATTTGCTGGAAAATTTTACTACTGTGTTAACACTACAACTGATGAGAGATTTGATATCAGCCAAATCAACAATTATAGCCAATGCGAAGAGCTCATTAAAAACAATGAAACTGCCAGATGGAAGAATGTGAAAGTTAACTTTGATAATGTAGGCCTTGGTTACCTTTCTCTACTTCAAGTG
Seq C2 exon
GCTACATTTAAAGGATGGATGGATATCATGTATGCAGCTGTGGATTCTCGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'26-26,'26-25,27-26
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
PF0052026=Ion_trans=FE(40.6=100)
C2:
PF0052026=Ion_trans=FE(7.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAACAGCTAATGCCTTGGG
R:
ATTACGAGAATCCACAGCTGCA
Band lengths:
164-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]