GgaEX1051710 @ galGal4
Exon Skipping
Gene
ENSGALG00000001171 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr28:2500933-2501753:-
Coord C1 exon
chr28:2501691-2501753
Coord A exon
chr28:2501204-2501305
Coord C2 exon
chr28:2500933-2501023
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCCCCCTCTTACCGGCACAGGCA
3' ss Score
6.98
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
AAGCTGACTTGGAGGTCGAACCAGCACGACATCAGCATCTGCCGGATGAAGGGGAAACACGAG
Seq A exon
GCAGAGTGCCGAAACTTCATCAAGGTGATGCTGGTGCGGAACCAGAACCTGCTCTTCGTGTGTGGCACCAACGCCTTCAACCCCATCTGTGCCAACTACAGC
Seq C2 exon
ATGGACACACTGGAGCCCATTGGGGACAACATCAGCGGCATGGCACGGTGTCCCTACGACCCCAAGCACGCCAATGTGGCGCTGTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001171_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(32.3=100)
A:
PF0140314=Sema=FE(7.8=100)
C2:
PF0140314=Sema=FE(7.1=100)
Main Skipping Isoform:
ENSGALT00000001774fB11790
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGACTTGGAGGTCGAAC
R:
CTGTGAACAGCGCCACATTG
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]