MmuEX6078492 @ mm10
Exon Skipping
Gene
ENSMUSG00000001227 | Sema6b
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:MGI Symbol;Acc:MGI:1202889]
Coordinates
chr17:56130706-56131585:-
Coord C1 exon
chr17:56131523-56131585
Coord A exon
chr17:56131113-56131214
Coord C2 exon
chr17:56130706-56130796
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTTCCCCACCCCAGGGT
3' ss Score
9.81
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
AAGCTGACCTGGCGCTCCAACCCCAGTGACATCGATGTGTGTCGAATGAAGGGCAAGCAAGAG
Seq A exon
GGTGAGTGTCGGAACTTTGTCAAGGTGCTCCTGCTTCGCGATGAGTCCACGCTGTTCGTGTGCGGCTCCAATGCGTTCAATCCCATCTGCGCCAATTACAGT
Seq C2 exon
ATGGACACACTGCAGCTTCTTGGTGACAGCATCAGCGGTATGGCCCGCTGCCCCTATGACCCCAAACATGCCAATGTCGCCCTCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001227-'12-8,'12-7,14-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.8=100)
A:
PF0140314=Sema=FE(7.8=100)
C2:
PF0140314=Sema=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGACCTGGCGCTCC
R:
CTGAGAAGAGGGCGACATTGG
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types