DreEX6049259 @ danRer10
Exon Skipping
Gene
ENSDARG00000061976 | sema6bb
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb [Source:ZFIN;Acc:ZDB-GENE-081105-129]
Coordinates
chr8:18980587-19004768:-
Coord C1 exon
chr8:19004706-19004768
Coord A exon
chr8:18986310-18986408
Coord C2 exon
chr8:18980587-18980677
Length
99 bp
Sequences
Splice sites
3' ss Seq
CACATGTTGTTGTTTTTCAGGAC
3' ss Score
10.8
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
AAAAGGACATGGGAGTCTAACAAAAATGACATCAGAATCTGTCGAATGAAGGGAAAACATGAG
Seq A exon
GACGAGTGCCGTAACTACATGAAGGTTCTGCTCAGCCGGCAGGGTGGATTGTTTATCTGCGGGACCAACGCCTTCAATCCGTTGTGTGCCAATTATACT
Seq C2 exon
GGAGACACTCTTGAGATGGTGGGTGAAACTGTAAGTGGCATGGCTCGATGCCCATACGACCCGAAACATGCCAACGTGGCCCTGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061976-'5-13,'5-12,6-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.8=100)
A:
PF0140314=Sema=FE(7.6=100)
C2:
PF0140314=Sema=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACATGGGAGTCTAACAAAA
R:
CTGCAAACAGGGCCACGTT
Band lengths:
151-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]