GgaEX1051697 @ galGal3
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
NA
Coordinates
chrZ:70728679-70731864:+
Coord C1 exon
chrZ:70728679-70728741
Coord A exon
chrZ:70729566-70729667
Coord C2 exon
chrZ:70731774-70731864
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTGTTTTTCTTCAGGAT
3' ss Score
12.22
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AAATTGACGTGGAAATCTAGACAAGCTGATGTAGACACATGCAGAATGAAGGGAAAACATAAG
Seq A exon
GATGAATGTCATAATTTTATTAAGGTTCTCTTAAAAAGAAACGAAGATACGTTGTTTATCTGTGGGACAAATGCATTCAACCCTTCTTGCAGGAACTACAAG
Seq C2 exon
ATGGATACACTGGAGTTCCTGGGAGATGAGTTCAGTGGAATGGCCAGGTGCCCCTACGATGCAAAGCATGCCAACGTTGCGTTGTTCGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294-'3-6,'3-3,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
PF0140314=Sema=FE(7.7=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGTGGAAATCTAGACAAGCTG
R:
CGCAACGTTGGCATGCTTTG
Band lengths:
140-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]