MmuEX6001490 @ mm9
Exon Skipping
Gene
ENSMUSG00000019647 | Sema6a
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:MGI Symbol;Acc:MGI:1203727]
Coordinates
chr18:47453674-47458793:-
Coord C1 exon
chr18:47458731-47458793
Coord A exon
chr18:47457840-47457941
Coord C2 exon
chr18:47453674-47453764
Length
102 bp
Sequences
Splice sites
3' ss Seq
CAGTTTGAACTCTGTTTCAGGAT
3' ss Score
7.95
5' ss Seq
AGGGTAACT
5' ss Score
5.8
Exon sequences
Seq C1 exon
AAACTGACATGGAAATCTAGACAGGCTGACGTAGACACATGCAGGATGAAGGGGAAACATAAG
Seq A exon
GATGAATGTCACAACTTCATTAAAGTTCTTCTCAAGAAGAATGATGATACGCTGTTTGTCTGTGGAACCAATGCCTTCAACCCTTCCTGCAGAAACTACAGG
Seq C2 exon
GTCGATACCTTGGAAACTTTTGGGGATGAATTTAGCGGAATGGCCAGATGCCCTTATGATGCCAAACATGCCAACATCGCTCTGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019647-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.4=100)
A:
PF0140314=Sema=FE(20.5=100)
C2:
PF0140314=Sema=FE(18.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACATGGAAATCTAGACAGGC
R:
ACAGAGCGATGTTGGCATGTT
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: