MmuEX6001490 @ mm10
Exon Skipping
Gene
ENSMUSG00000019647 | Sema6a
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:MGI Symbol;Acc:MGI:1203727]
Coordinates
chr18:47294020-47299139:-
Coord C1 exon
chr18:47299077-47299139
Coord A exon
chr18:47298186-47298287
Coord C2 exon
chr18:47294020-47294110
Length
102 bp
Sequences
Splice sites
3' ss Seq
CAGTTTGAACTCTGTTTCAGGAT
3' ss Score
7.95
5' ss Seq
AGGGTAACT
5' ss Score
5.8
Exon sequences
Seq C1 exon
AAACTGACATGGAAATCTAGACAGGCTGACGTAGACACATGCAGGATGAAGGGGAAACATAAG
Seq A exon
GATGAATGTCACAACTTCATTAAAGTTCTTCTCAAGAAGAATGATGATACGCTGTTTGTCTGTGGAACCAATGCCTTCAACCCTTCCTGCAGAAACTACAGG
Seq C2 exon
GTCGATACCTTGGAAACTTTTGGGGATGAATTTAGCGGAATGGCCAGATGCCCTTATGATGCCAAACATGCCAACATCGCTCTGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019647-'14-10,'14-9,15-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.4=100)
A:
PF0140314=Sema=FE(20.5=100)
C2:
PF0140314=Sema=FE(18.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACATGGAAATCTAGACAGGC
R:
ACAGAGCGATGTTGGCATGTT
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types