BtaEX0031893 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020489 | SEMA6A
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:HGNC Symbol;Acc:HGNC:10738]
Coordinates
chr7:38740765-38747781:+
Coord C1 exon
chr7:38740765-38740827
Coord A exon
chr7:38741529-38741630
Coord C2 exon
chr7:38747691-38747781
Length
102 bp
Sequences
Splice sites
3' ss Seq
AAGTTTGAACTGTTTTTCAGGAT
3' ss Score
6.92
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAACTGACATGGAAATCTAGACAGGCTGATGTAGACACATGCAGAATGAAGGGAAAACATAAG
Seq A exon
GATGAGTGTCACAACTTTATTAAAGTTCTGCTGAAGAAAAATGATGATACTTTGTTCGTCTGTGGAACTAATGCCTTCAACCCTTCCTGCAGAAACTATAAG
Seq C2 exon
ATGGATACTTTGGAGCCTGTGGGTGATGAATTTAGCGGAATGGCCAGATGCCCTTACGATGCCAAACATGCCAATATCGCACTGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020489-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
PF0140314=Sema=FE(7.6=100)
C2:
PF0140314=Sema=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACATGGAAATCTAGACAGGC
R:
GCAAACAGTGCGATATTGGCA
Band lengths:
150-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development