GgaEX1051697 @ galGal4
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
Semaphorin-6A isoform4 [Source:UniProtKB/TrEMBL;Acc:E1C1C2]
Coordinates
chrZ:72446414-72449599:+
Coord C1 exon
chrZ:72446414-72446476
Coord A exon
chrZ:72447301-72447402
Coord C2 exon
chrZ:72449509-72449599
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTGTTTTTCTTCAGGAT
3' ss Score
12.22
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AAATTGACGTGGAAATCTAGACAAGCTGATGTAGACACATGCAGAATGAAGGGAAAACATAAG
Seq A exon
GATGAATGTCATAATTTTATTAAGGTTCTCTTAAAAAGAAACGAAGATACGTTGTTTATCTGTGGGACAAATGCATTCAACCCTTCTTGCAGGAACTACAAG
Seq C2 exon
ATGGATACACTGGAGTTCCTGGGAGATGAGTTCAGTGGAATGGCCAGGTGCCCCTACGATGCAAAGCATGCCAACGTTGCGTTGTTCGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294-'14-11,'14-8,15-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
PF0140314=Sema=FE(7.7=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGTGGAAATCTAGACAAGCTG
R:
CGCAACGTTGGCATGCTTTG
Band lengths:
140-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]