HsaEX6099526 @ hg19
Exon Skipping
Gene
ENSG00000092421 | SEMA6A
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:HGNC Symbol;Acc:10738]
Coordinates
chr5:115827436-115832009:-
Coord C1 exon
chr5:115831947-115832009
Coord A exon
chr5:115831109-115831210
Coord C2 exon
chr5:115827436-115827526
Length
102 bp
Sequences
Splice sites
3' ss Seq
CAGTTTGAATTATTTTTCAGGAT
3' ss Score
7.81
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAACTGACATGGAAATCTAGACAGGCCGATGTAGACACATGCAGAATGAAGGGAAAACATAAG
Seq A exon
GATGAGTGCCACAACTTTATTAAAGTTCTTCTAAAGAAAAACGATGATGCATTGTTTGTCTGTGGAACTAATGCCTTCAACCCTTCCTGCAGAAACTATAAG
Seq C2 exon
ATGGATACATTGGAACCATTCGGGGATGAATTCAGCGGAATGGCCAGATGCCCATATGATGCCAAACATGCCAACGTTGCACTGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092421-'9-12,'9-9,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(33.9=100)
A:
PF0140314=Sema=FE(32.4=100)
C2:
PF0140314=Sema=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGAAATCTAGACAGGCCG
R:
CAAACAGTGCAACGTTGGCAT
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)