HsaEX6099526 @ hg38
Exon Skipping
Gene
ENSG00000092421 | SEMA6A
Description
semaphorin 6A [Source:HGNC Symbol;Acc:HGNC:10738]
Coordinates
chr5:116491740-116496313:-
Coord C1 exon
chr5:116496251-116496313
Coord A exon
chr5:116495413-116495514
Coord C2 exon
chr5:116491740-116491830
Length
102 bp
Sequences
Splice sites
3' ss Seq
CAGTTTGAATTATTTTTCAGGAT
3' ss Score
7.81
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAACTGACATGGAAATCTAGACAGGCCGATGTAGACACATGCAGAATGAAGGGAAAACATAAG
Seq A exon
GATGAGTGCCACAACTTTATTAAAGTTCTTCTAAAGAAAAACGATGATGCATTGTTTGTCTGTGGAACTAATGCCTTCAACCCTTCCTGCAGAAACTATAAG
Seq C2 exon
ATGGATACATTGGAACCATTCGGGGATGAATTCAGCGGAATGGCCAGATGCCCATATGATGCCAAACATGCCAACGTTGCACTGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092421-'17-22,'17-19,18-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(33.9=100)
A:
PF0140314=Sema=FE(32.4=100)
C2:
PF0140314=Sema=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGAAATCTAGACAGGCCG
R:
CAAACAGTGCAACGTTGGCAT
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains