RnoEX0079377 @ rn6
Exon Skipping
Gene
ENSRNOG00000004033 | Sema6a
Description
semaphorin 6A [Source:RGD Symbol;Acc:1305493]
Coordinates
chr18:41377264-41382395:-
Coord C1 exon
chr18:41382333-41382395
Coord A exon
chr18:41381522-41381623
Coord C2 exon
chr18:41377264-41377354
Length
102 bp
Sequences
Splice sites
3' ss Seq
CAGTTTGAACTCTGTTTCAGGAT
3' ss Score
7.95
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
AAACTGACATGGAAATCTAGACAGGCTGATGTAGACACATGCAGGATGAAGGGGAAGCATAAG
Seq A exon
GATGAATGTCACAACTTCATTAAAGTTCTTCTCAAGAAGAACGATGACACGCTGTTTGTCTGTGGAACCAATGCCTTCAACCCTTCCTGCAGAAACTACAGG
Seq C2 exon
GTGGATACTTTGGAAACTTTTGGGGATGAATTTAGTGGAATGGCCAGATGCCCTTATGATGCCAAACATGCCAACATCGCTCTGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004033-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
PF0140314=Sema=FE(7.6=100)
C2:
PF0140314=Sema=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACATGGAAATCTAGACAGGC
R:
ACAGAGCGATGTTGGCATGTT
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]