DreEX6066453 @ danRer10
Exon Skipping
Gene
ENSDARG00000011533 | sema6dl
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like [Source:ZFIN;Acc:ZDB-GENE-050417-171]
Coordinates
chr18:40382975-40383452:+
Coord C1 exon
chr18:40382975-40383037
Coord A exon
chr18:40383123-40383224
Coord C2 exon
chr18:40383362-40383452
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTGTCTTCCTCTCAGGAC
3' ss Score
10.48
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
AAGCTGACGTGGCGGTCGGGGCAGGCTGACAGAGAGACGTGCGCCATGAAGGGAAAACACAGA
Seq A exon
GACGAGTGCCATAATTTCATTAAAGTCCTGGTTCCGAGAAATGATGATCTCGTGTTCATCTGCGGAACAAATGGTTTCAATCCCATGTGCCGTTACTACAGG
Seq C2 exon
TTGGATAACCTGGAATTTGATGGGGAAGAGATCAGCGGTTTGGCCCGATGCCCGTTTGACGCTAAGCAGACAAACGTTGCCCTGTTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011533-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(14.7=100)
A:
PF0140314=Sema=FE(24.3=100)
C2:
PF0140314=Sema=PD(30.9=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGGGCAGGCTGACAG
R:
GCAAACAGGGCAACGTTTGTC
Band lengths:
138-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]