MmuEX6104544 @ mm10
Exon Skipping
Gene
ENSMUSG00000027200 | Sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:MGI Symbol;Acc:MGI:2387661]
Coordinates
chr2:124654978-124655576:+
Coord C1 exon
chr2:124654978-124655040
Coord A exon
chr2:124655153-124655254
Coord C2 exon
chr2:124655486-124655576
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTCCTTCAGGAT
3' ss Score
13.28
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
AAGCTGACGTGGAGGTCCAGACAGCAGGATCGAGAAAATTGTGCTATGAAAGGCAAGCATAAA
Seq A exon
GATGAATGCCACAACTTCATCAAAGTCTTTGTCCCAAGAAATGATGAGATGGTTTTTGTCTGTGGTACCAATGCTTTCAACCCGATGTGCAGATACTATAGG
Seq C2 exon
TTGAGAACGTTAGAGTATGATGGGGAAGAAATTAGTGGCCTGGCACGATGCCCGTTTGATGCCCGACAAACCAATGTCGCCCTCTTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027200-'30-43,'30-35,37-43=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.7=100)
A:
PF0140314=Sema=FE(7.8=100)
C2:
PF0140314=Sema=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGACGTGGAGGTCCA
R:
CAGCAAAGAGGGCGACATTGG
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types