RnoEX6018833 @ rn6
Exon Skipping
Gene
ENSRNOG00000004812 | Sema6d
Description
semaphorin 6D [Source:RGD Symbol;Acc:1310910]
Coordinates
chr3:116944795-116945573:+
Coord C1 exon
chr3:116944795-116944855
Coord A exon
chr3:116945147-116945248
Coord C2 exon
chr3:116945483-116945573
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTAATTATTTTTACTTTAGGAT
3' ss Score
8.96
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGATCAAGTCTATACAGTGAACTTAAATGACATCCCCCAAACAGAGGTGATCCCGAGCAAG
Seq A exon
GATGAATGTCACAACTTCATCAAAGTCTTTGTCCCAAGAAATGATGAGATGGTTTTTGTCTGTGGCACCAACGCTTTCAACCCGATGTGCAGATACTATAGG
Seq C2 exon
TTGAGTACCTTAGAGTATGATGGGGAAGAAATTAGTGGCCTGGCACGGTGCCCGTTTGATGCCCGACAAACCAATGTTGCCCTCTTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004812-'17-13,'17-12,20-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(5.0=100)
A:
PF0140314=Sema=FE(8.2=100)
C2:
PF0140314=Sema=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGAACTTAAATGACATCCCCC
R:
AGCAAAGAGGGCAACATTGGT
Band lengths:
138-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]