GgaEX7007431 @ galGal4
Exon Skipping
Gene
ENSGALG00000004844 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr10:9406103-9406660:+
Coord C1 exon
chr10:9406103-9406165
Coord A exon
chr10:9406248-9406349
Coord C2 exon
chr10:9406570-9406660
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACATTTTAATCTCTTTTCAGGAT
3' ss Score
11
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
AAATTAACATGGAGGTCAAGGCAGCAGGACAGAGAGAACTGTGCTATGAAAGGAAAACATAAA
Seq A exon
GATGAATGCCATAACTTCATTAAAGTCTTTGTTCCAAGAAATGACGAGATGGTGTTTGTCTGTGGAACAAATGCATTTAATCCTATGTGCAGATACTATCGG
Seq C2 exon
CTGAGTACGTTAGAGTATGATGGGGAGGAAATTAGTGGTTTGGCAAGATGCCCATTTGATGCCAGACAAACCAATGTCGCCCTCTTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004844-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.7=100)
A:
PF0140314=Sema=FE(7.7=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTAACATGGAGGTCAAGGCA
R:
CAGCAAAGAGGGCGACATTGG
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]