HsaEX6092044 @ hg19
Exon Skipping
Gene
ENSG00000167680 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:10739]
Coordinates
chr19:4555486-4557025:-
Coord C1 exon
chr19:4556963-4557025
Coord A exon
chr19:4556000-4556101
Coord C2 exon
chr19:4555486-4555576
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTGTCCCCACCTCAGGGC
3' ss Score
8.95
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
AAGCTGACCTGGAGATCTAACCCCAGCGACATAAACGTGTGTCGGATGAAGGGCAAACAGGAG
Seq A exon
GGCGAGTGTCGAAACTTCGTAAAGGTGCTGCTCCTTCGGGACGAGTCCACGCTCTTTGTGTGCGGTTCCAACGCCTTCAACCCGGTGTGCGCCAACTACAGC
Seq C2 exon
ATAGACACCCTGCAGCCCGTCGGAGACAACATCAGCGGTATGGCCCGCTGCCCGTACGACCCCAAGCACGCCAATGTTGCCCTCTTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167680-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.1=100)
A:
PF0140314=Sema=FE(16.7=100)
C2:
PF0140314=Sema=FE(15.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGACCTGGAGATCTAACCC
R:
CAGAGAAGAGGGCAACATTGG
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)