BtaEX6038930 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031658 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr7:20791035-20792340:+
Coord C1 exon
chr7:20791035-20791097
Coord A exon
chr7:20791526-20791627
Coord C2 exon
chr7:20792250-20792340
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCCACCCCATTCCAGGGC
3' ss Score
9.53
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
AAGCTGACCTGGCGCTCCAACCCCAGCGACATCAACGTGTGTCGGATGAAGGGCAAGCAGGAG
Seq A exon
GGCGAGTGTCGAAATTTTGTAAAGGTGCTTCTACTTCGGGACGAATCCACTCTCTTCGTGTGTGGTTCCAATGCCTTCAACCCCGTGTGTGCCAACTACAGC
Seq C2 exon
ATGGACACACTGCAGCCCCTCCGGGACAACATCAGCGGCATGGCCCGCTGCCCATATGACCCCAAACACGCCAACGTTGCCCTCTTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031658-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.7=100)
A:
PF0140314=Sema=FE(7.8=100)
C2:
PF0140314=Sema=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGACCTGGCGCTCC
R:
CAGAGAAGAGGGCAACGTTGG
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]