GgaEX1053035 @ galGal3
Exon Skipping
Gene
ENSGALG00000009728 | F1NWI3_CHICK
Description
NA
Coordinates
chr2:24151823-24162429:-
Coord C1 exon
chr2:24162376-24162429
Coord A exon
chr2:24158604-24158746
Coord C2 exon
chr2:24151823-24151938
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATGTTGTATTCATTTGACAGTAT
3' ss Score
4.98
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTGGCTCTAACCAAGAGAGCTGATCCAGCTGAGTTGAAAACAATATTTTTGAAG
Seq A exon
TATGCAAGTGTGGAGAAGAATGGGGAATTCTTCATGTCTCCTAATGACTTTGTCACACGGTACCTGAAGATAATTGGGGATGGTTTGCCGAATGCAAACACTGTTCAGCTCCTTGCAGGTGTGGTGGATCAGACAAAAGATGG
Seq C2 exon
GTTGATATCCTTTCAAGAGTTTGTGGCATTTGAATCAGTCCTGTGCGCTCCAGATGCATTGTTCATAGTAGCCTTTCAGCTATTTGACAAGACTGGCAAAGGAGAAGTTACTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009728-'3-7,'3-4,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(10.6=38.9)
A:
PF134991=EF-hand_7=FE(71.2=100)
C2:
PF134991=EF-hand_7=PD(15.2=25.0),PF134051=EF-hand_6=PU(51.4=47.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAACCAAGAGAGCTGATCCAG
R:
AAGTAACTTCTCCTTTGCCAGTCT
Band lengths:
162-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]