RnoEX0081782 @ rn6
Exon Skipping
Gene
ENSRNOG00000009957 | Slc25a13
Description
solute carrier family 25 member 13 [Source:RGD Symbol;Acc:1565889]
Coordinates
chr4:31691338-31729266:-
Coord C1 exon
chr4:31729213-31729266
Coord A exon
chr4:31718680-31718822
Coord C2 exon
chr4:31691338-31691453
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTCCTCTTTAAACAGTAT
3' ss Score
9.38
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTGGCTTTAACCAAGAGAGCAGATCCAGCTGAGCTTAAAGCAATATTTTTGAAG
Seq A exon
TATGCAAGCATTGAAAAAAATGGTGAATTTTTTATGTCACCTCATGACTTTGTCACTCGGTATTTGAATATTTTTGGAGAAAGCCAGCCCAACCCGAAGACTGTGGAACTGTTAAGCGGTGTGGTGGATCAGACCAAAGATGG
Seq C2 exon
GTTAATATCCTTCCAAGAATTTGTAGCGTTCGAATCTGTCCTGTGTGCTCCGGATGCCTTGTTTATGGTGGCCTTCCAGCTGTTTGACAAAGCTGGCAAAGGAGAGGTTACTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009957-'3-2,'3-1,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(14.5=55.6)
A:
PF134991=EF-hand_7=FE(68.1=100)
C2:
PF134991=EF-hand_7=PD(14.5=25.0),PF134051=EF-hand_6=PU(50.0=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTTAACCAAGAGAGCAGA
R:
CAAAAGTAACCTCTCCTTTGCCA
Band lengths:
170-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]