HsaEX6009111 @ hg38
Exon Skipping
Gene
ENSG00000004864 | SLC25A13
Description
solute carrier family 25 member 13 [Source:HGNC Symbol;Acc:HGNC:10983]
Coordinates
chr7:96234802-96296951:-
Coord C1 exon
chr7:96296898-96296951
Coord A exon
chr7:96277196-96277338
Coord C2 exon
chr7:96234802-96234917
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTTTTTAAACAGTAT
3' ss Score
9.56
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTGGCTTTAACCAAGAGAGCAGATCCAGCTGAGCTTAGAACAATATTTTTGAAG
Seq A exon
TATGCAAGCATTGAGAAAAACGGTGAATTTTTCATGTCCCCCAATGACTTTGTCACTCGATACTTGAACATTTTTGGAGAAAGCCAGCCTAATCCAAAGACTGTGGAACTTTTAAGTGGAGTGGTGGATCAGACCAAAGATGG
Seq C2 exon
ATTAATATCTTTTCAAGAATTTGTTGCCTTTGAATCTGTCCTGTGTGCCCCTGATGCTTTGTTTATGGTAGCCTTTCAGCTGTTTGACAAAGCTGGCAAAGGAGAAGTAACTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000004864-'7-12,'7-5,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(10.6=38.9)
A:
PF134991=EF-hand_7=FE(71.2=100)
C2:
PF134991=EF-hand_7=PD(15.2=25.0),PF134051=EF-hand_6=PU(50.0=47.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTTAACCAAGAGAGCAGA
R:
CAAAAGTTACTTCTCCTTTGCCAGC
Band lengths:
170-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains