MmuEX0042830 @ mm9
Exon Skipping
Gene
ENSMUSG00000015112 | Slc25a13
Description
solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 [Source:MGI Symbol;Acc:MGI:1354721]
Coordinates
chr6:6102408-6141317:-
Coord C1 exon
chr6:6141264-6141317
Coord A exon
chr6:6130971-6131113
Coord C2 exon
chr6:6102408-6102523
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTCCTCTTTCGACAGTAT
3' ss Score
8.99
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTGGCTTTAACCAAGAGAGCCGATCCAGCTGAGCTTAAAGCAATATTTTTGAAG
Seq A exon
TATGCGAGCATTGAAAAAAATGGTGAATTTTTTATGTCTCCTCATGACTTTGTCACTCGGTATTTGAATATTTTTGGAGAAAGCCAGCCCAACCCGAAAACTGTGGAACTTTTAAGTGGTGTAGTGGATCAGACCAAAGATGG
Seq C2 exon
GTTAATATCCTTCCAAGAGTTTGTAGCCTTTGAGTCTGTCCTGTGTGCTCCGGATGCCTTGTTTATGGTGGCGTTCCAGCTGTTTGACAAAGCTGGCAAAGGAGAGGTTACTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015112_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(14.5=55.6)
A:
PF134991=EF-hand_7=FE(68.1=100)
C2:
PF134991=EF-hand_7=PD(14.5=25.0),PF134051=EF-hand_6=PU(50.0=47.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTTAACCAAGAGAGCCG
R:
CAAAAGTAACCTCTCCTTTGCCA
Band lengths:
170-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: