GgaEX1053599 @ galGal4
Exon Skipping
Gene
ENSGALG00000013515 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr22:2843542-2844432:-
Coord C1 exon
chr22:2844319-2844432
Coord A exon
chr22:2843971-2844084
Coord C2 exon
chr22:2843542-2843703
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCACCTCTCACTCCGGCAGCTC
3' ss Score
8.3
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTCAGGGCCTTCATTGCTGACTTTTCCAATGTCTTCTCCATCCTGCTGTTTTGTGGTGTGGATGCCTGTTTCGGCCTGGACACCCCGAAGCTGCACATCCCCAGTATCATCAAG
Seq A exon
CTCCGTAAGCTCATTAGCGATTTCTCTATCTTTATGTCCATACTAATGTTTGTGGGGCTGGATGTGCTTTTCGGACTGAACACCCCAAAGCTCCAAGTGCCTACTGACTTTAAG
Seq C2 exon
CCCACGCGTGTGGACCGAGGGTGGTTTGTCTTTCCCTTTGGGAAGAACCCATGGTGGGTGTACCTGGCCAGCGCGCTGCCTGCCCTGCTCGTCACCATCCTCATCTTCATGGACCAGCAGATCACAGCCGTCATCGTCAACAGGAAGGAGCACAAGCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-'25-28,'25-27,26-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=PD(0.1=0.0)
C2:
PF0095516=HCO3_cotransp=FE(11.8=100)
Main Inclusion Isoform:
ENSGALT00000022007fB12108
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCCTTCATTGCTGACTT
R:
GACGATGACGGCTGTGATCTG
Band lengths:
250-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]