GgaEX1053598 @ galGal4
Exon Skipping
Gene
ENSGALG00000013515 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr22:2843542-2844990:-
Coord C1 exon
chr22:2844790-2844990
Coord A exon
chr22:2844319-2844432
Coord C2 exon
chr22:2843542-2843703
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCCATCTGCCTCCAGGTC
3' ss Score
12.1
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
TACAATGCTATTAACCTCACAGCTCTGGATTGGACTCAGCTGAGTAAGAAGGAGTGTCTCAAGTACGGCGGCAGCTTAGTGGGGAAATCCTGTAAGTTCGTGCCCGATTTGGCCCTCATGTCCTTCATCCTCTTCTTTGGGACCTACTCCATGACGCTCACCTTGAAGAAGTTCAAATTCAGCCGCTACTTCCCCACCAAG
Seq A exon
GTCAGGGCCTTCATTGCTGACTTTTCCAATGTCTTCTCCATCCTGCTGTTTTGTGGTGTGGATGCCTGTTTCGGCCTGGACACCCCGAAGCTGCACATCCCCAGTATCATCAAG
Seq C2 exon
CCCACGCGTGTGGACCGAGGGTGGTTTGTCTTTCCCTTTGGGAAGAACCCATGGTGGGTGTACCTGGCCAGCGCGCTGCCTGCCCTGCTCGTCACCATCCTCATCTTCATGGACCAGCAGATCACAGCCGTCATCGTCAACAGGAAGGAGCACAAGCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-'24-28,'24-26,25-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(14.7=100)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTTGGCCCTCATGTCCTT
R:
CCTTCCTGTTGACGATGACGG
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]