HsaEX0059827 @ hg19
Exon Skipping
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:HGNC Symbol;Acc:18168]
Coordinates
chr2:74460529-74466662:-
Coord C1 exon
chr2:74466462-74466662
Coord A exon
chr2:74462228-74462341
Coord C2 exon
chr2:74460529-74460690
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGCTCATCTCCTGTCTGCAGGTC
3' ss Score
10.9
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
TACAACCTCCTTAACCTCACAGCGTTGGACTGGTCCCTGCTGAGCAAGAAGGAGTGTCTGAGCTACGGCGGGCGCCTGCTTGGGAATTCCTGCAAGTTTATCCCAGACCTGGCGCTCATGTCCTTCATCCTTTTCTTTGGGACATACTCCATGACCCTGACCCTGAAGAAGTTCAAATTCAGCCGCTATTTTCCTACCAAG
Seq A exon
GTCCGGGCCCTGGTGGCTGACTTTTCCATTGTTTTCTCCATCCTGATGTTCTGTGGAATCGATGCCTGTTTTGGCCTAGAAACTCCCAAGCTGCATGTGCCCAGTGTCATCAAG
Seq C2 exon
CCAACGCGGCCTGACCGAGGCTGGTTCGTGGCCCCCTTTGGGAAGAACCCGTGGTGGGTATACCCAGCAAGCATCCTGCCCGCCCTGCTGGTGACCATCCTGATCTTCATGGACCAGCAGATCACTGCCGTCATTGTCAACCGGAAGGAGAACAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(14.0=100)
A:
PF0095516=HCO3_cotransp=FE(14.1=100)
C2:
PF0095516=HCO3_cotransp=FE(11.2=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCGCTCATGTCCTTCATC
R:
TCCTTCCGGTTGACAATGACG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)