GgaEX6024828 @ galGal3
Exon Skipping
Gene
ENSGALG00000013515 | SLC4A5
Description
NA
Coordinates
chr22_random:19178-21522:-
Coord C1 exon
chr22_random:21322-21522
Coord A exon
chr22_random:19955-20068
Coord C2 exon
chr22_random:19178-19339
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCCATCTGCCTCCAGGTC
3' ss Score
12.1
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
TACAATGCTATTAACCTCACAGCTCTGGATTGGACTCAACTGAGTAAGAAGGAGTGTCTCAAGTACGGCGGCAGCTTAGTGGGGAAATCCTGTAAGTTCGTGCCCGATTTGGCCCTCATGTCCTTCATCCTCTTCTTTGGGACCTACTCCATGACGCTCACCTTGAAGAAGTTCAAATTCAGCCGCTACTTCCCCACCAAG
Seq A exon
GTCAGGGCCTTCATTGCTGACTTTTCCAATGTCTTCTCCATCCTGCTGTTTTGTGGTGTGGATGCCTGTTTCGGCCTGGACACCCCGAAGCTGCACATCCCCAGTATCATCAAG
Seq C2 exon
CCCACGCGTGTGGACCGAGGGTGGTTTGTCTTTCCCTTTGGGAAGAACCCATGGTGGGTGTACCTGGCCAGCGCTCTGCCTGCCCTGCTCGTCACCATCCTCATCTTCATGGACCAGCAGATCACAGCCGTCATCGTCAACAGGAAGGAGCACAAGCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(17.2=100)
A:
PF0095516=HCO3_cotransp=FE(9.6=100)
C2:
PF0095516=HCO3_cotransp=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTTGGCCCTCATGTCCTT
R:
CCTTCCTGTTGACGATGACGG
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]