RnoEX6014027 @ rn6
Exon Skipping
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114976267-114985497:+
Coord C1 exon
chr4:114976267-114976467
Coord A exon
chr4:114982928-114983041
Coord C2 exon
chr4:114985336-114985497
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTGTCTTCTTCGCAGGTC
3' ss Score
11.11
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
TACACCCCCCTTAACCTCACAGCGCTGGACTGGTCTCTGCTGAGCAAGAAGGAATGTCTGAGCTATGGGGGGCGCCTGCTTGGGAGCTCCTGCCAGTTCGTCCCCGACTTGGCCCTCATGTCCTTCATCCTTTTCTTTGGGACTTACTCCATGACCTTGACTCTGAAGAAATTCAAATTCAGCCGCTATTTCCCCACCAAG
Seq A exon
GTCCGAACCCTGGTGGCTGACTTCTCCATTGTTTTCTCCATCCTGCTGTTCTGTGGAATCGATGCCTGTTTTGGCCTGCAAACCCCCAAGCTGCACGTGCCTAATGTCATCAAG
Seq C2 exon
CCCACAAGGCCTGACCGAGGCTGGTTCGTTGCCCCCTTTGGGAAGAATCCTTGGTGGGTGTACCCTGCCAGCATCCTGCCGGCCCTGCTGGTGACCATCCTGATCTTCATGGACCAGCAGATCACTGCTGTCATTGTCAACAGGAAGGAGAACAAGCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378-'21-31,'21-30,26-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(12.7=100)
A:
PF0095516=HCO3_cotransp=FE(14.2=100)
C2:
PF0095516=HCO3_cotransp=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAACCTCACAGCGCTGGAC
R:
ACCCACCAAGGATTCTTCCCA
Band lengths:
251-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]